Shopify MYOB Integration: How to Sync Your Store with MYOB Automatically

Running a Shopify store on MYOB without an integration means someone is doing bookkeeping by hand. Orders get exported to spreadsheets, payouts get matched line by line, and GST figures get double-checked at BAS time because nobody fully trusts the numbers. A proper Shopify MYOB integration removes that work — sales flow into MYOB daily, payouts reconcile against the bank feed, and month-end becomes a review instead of a data entry job.

Why Your Shopify Store Needs to Talk to MYOB

Every Shopify Payments payout bundles together dozens of individual transactions: sales, refunds, shipping charges, and Shopify's own fees, all netted into a single deposit. Without an integration you have two bad options — record the lump sum and lose all visibility into what you actually sold, or key in every order manually, which stops scaling somewhere around your second busy week.

If your business runs Xero rather than MYOB, the same problem applies but the tooling differs — our Shopify Xero integration guide covers that side.

One thing to confirm before you start: which MYOB product you are on. MYOB Business (the cloud product, including Lite and Pro) and MYOB AccountRight are both supported by the main integration options, but feature limits differ — particularly around inventory, where MYOB's Premium Inventory add-on unlocks unlimited product syncing while Lite and Pro plans are capped at 10 products.

Option 1: MYOB's Official Shopify Integration (Powered by Amaka)

MYOB's own Shopify integration, available through the MYOB app marketplace, is built and operated by Amaka — and the entry plan is genuinely free. It connects one store, handles up to 60 orders per month, and syncs a daily summary of the previous day's sales into MYOB as a single invoice. The 2-Minute Express setup maps sales and payments to default accounts automatically, and transactions are matched to the bank feed to speed up reconciliation.

For a newer store with modest volume and simple product lines, this is a complete solution at zero cost. The daily summary invoice approach also keeps your MYOB file clean — one entry per day rather than one per order.

The 60-order monthly cap is the obvious ceiling. The free plan also covers sales and payment transactions only: no cost of goods sold, no inventory sync, and back-syncing of historical data is limited to one day.

Option 2: Amaka Premium and Custom Connectors

When you outgrow the free tier, Amaka's paid plans are the natural next step. Premium runs around $18 USD per month billed annually and lifts the limit to 500 orders per month across two stores, adding COGS syncing and inventory sync so stock-on-hand stays consistent between Shopify and MYOB. Premium+ at around $49 USD per month removes the order limits entirely and adds advanced account mapping and up to 365 days of back-sync — useful if you are cleaning up a year of unintegrated history. Both come with a 7-day trial.

If your requirements go beyond what an off-the-shelf connector handles — complex B2B pricing rules, multi-warehouse inventory, or a heavily customised AccountRight file — Australian integration specialists such as MyIntegrator build custom sync workflows for orders, inventory, customers, and pricing between Shopify and MYOB AccountRight. Expect a project cost rather than a monthly subscription, but you get a sync built around your exact process.

Which One Should You Choose

Start with the free MYOB-Amaka integration if you process fewer than 60 orders per month and just need sales and payments landing in MYOB correctly. There is no reason to pay for more than you use.

Move to Amaka Premium when you cross the order cap, need inventory or COGS syncing, or run a second store. If a bookkeeper reviews your file monthly, the cleaner data is usually worth it well before the cap forces the decision.

Consider a custom connector only when an off-the-shelf option demonstrably cannot model your workflow — it is the most powerful path, but also the one with the most setup and maintenance overhead.

Getting Started

Before connecting anything, make sure your MYOB chart of accounts has dedicated accounts for sales, refunds, shipping income, and merchant fees, and that your GST codes are assigned correctly. The Express setup will create defaults for you, but reviewing the mapping before the first sync prevents cleanup work later.

If you want help choosing the right option, configuring the account and tax mappings, or fixing a sync that has drifted out of step with your bank feed, our Shopify Integrations service covers exactly this — setup, testing against live data, and documentation your bookkeeper can follow.

The bottom line: connecting Shopify to MYOB properly is a small one-time investment that pays back every month. Set it up once, review the first few syncs, and your bookkeeping largely looks after itself.